PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023470m
Common NameCARUB_v10023471mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 369aa    MW: 42283.2 Da    PI: 9.5547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023470mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-15453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW+ eEd ll  +v+q+G++ W++++++m+  ++R +k+c +rw +yl
  Carubv10023470m  4 RQRWSGEEDALLRAYVRQFGPREWHLVSERMNrpLNRDAKSCLERWKNYL 53
                     89**********************************************97 PP

2Myb_DNA-binding36.31.3e-1159103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  Carubv10023470m  59 KGSLTEEEQRLVIRLQEKHGNK-WKKIASEVP-GRTAKRLGKWWEVF 103
                      6788******************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.469153IPR017930Myb domain
SMARTSM007171.8E-13355IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-21498IPR009057Homeodomain-like
CDDcd001671.05E-7653No hitNo description
Gene3DG3DSA:1.10.10.608.1E-20660IPR009057Homeodomain-like
PfamPF139214.1E-13767No hitNo description
PROSITE profilePS5129423.0854108IPR017930Myb domain
SMARTSM007172.1E-1058106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-1561102IPR009057Homeodomain-like
CDDcd001677.63E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNRPLNR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV IRLQEKHGNK WKKIASEVPG RTAKRLGKWW EVFKEKQQRE EKESNKRVEP  120
IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AAATVVMANS NGGFLHSDQQ VQPPNPVIPP  180
WLANPNNGNN VVVRPPSVTL TLSPSTLAAA APQPPIPWLQ QQQPERAESG PGGLVLGSMM  240
PSCSGSSEGV FLSELVECCR ELEEGHRAWA DHKKEAAWRL RRLELQLESE KTCRQREKME  300
EIEAKMKALR EEQKSAMEKI EGEYREQLVG LRRDAEAKDQ KLADQWTSKH IRLTKFLEQN  360
MGCRLDRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-15792789MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-15792789C-Myb DNA-Binding Domain
1msf_C2e-15792789C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankAF1759960.0AF175996.1 Arabidopsis thaliana putative transcription factor (MYB91) mRNA, complete cds.
GenBankAY5195780.0AY519578.1 Arabidopsis thaliana MYB transcription factor (At2g37630) mRNA, complete cds.
GenBankBT0260270.0BT026027.1 Arabidopsis thaliana At2g37630 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294458.10.0hypothetical protein CARUB_v10023471mg
RefseqXP_006294459.10.0hypothetical protein CARUB_v10023471mg
SwissprotO809310.0AS1_ARATH; Transcription factor AS1
TrEMBLR0FXB60.0R0FXB6_9BRAS; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40015200.0(Arabidopsis lyrata)
STRINGscaffold_402408.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61862740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.10.0MYB family protein